J7_12DQ_003

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

12DQ|1|2A|A|945, 12DQ|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2A|C|817
12DQ|1|2A|G|818
12DQ|1|2A|A|819
12DQ|1|2A|A|820
12DQ|1|2A|A|821
12DQ|1|2A|U|822
*
12DQ|1|2A|A|835
12DQ|1|2A|G|836
*
12DQ|1|2A|U|943
12DQ|1|2A|G|944
12DQ|1|2A|A|945
12DQ|1|2A|G|946
*
12DQ|1|2A|C|971
12DQ|1|2A|G|972
12DQ|1|2A|A|973
12DQ|1|2A|G|974
12DQ|1|2A|C|975
12DQ|1|2A|G|975|||A
12DQ|1|2A|C|976
*
12DQ|1|2A|G|987
12DQ|1|2A|A|988
12DQ|1|2A|G|989
12DQ|1|2A|A|990
12DQ|1|2A|C|991
*
12DQ|1|2A|G|1163
12DQ|1|2A|G|1164
*
12DQ|1|2A|C|1185
12DQ|1|2A|G|1186
12DQ|1|2A|G|1187
12DQ|1|2A|U|1188
12DQ|1|2A|A|1189
12DQ|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21