J7_1JZX_002

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAU*AGCC*GAGUGAG*CGAGAG*CAGACCAU*AUGGAUUC*GUCUGGUAG

Length

48 nucleotides

Bulged bases

1JZX|1|A|A|956, 1JZX|1|A|U|1172, 1JZX|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZX|1|A|C|830
1JZX|1|A|G|831
1JZX|1|A|A|832
1JZX|1|A|A|833
1JZX|1|A|A|834
1JZX|1|A|U|835
*
1JZX|1|A|A|848
1JZX|1|A|G|849
1JZX|1|A|C|850
1JZX|1|A|C|851
*
1JZX|1|A|G|951
1JZX|1|A|A|952
1JZX|1|A|G|953
1JZX|1|A|U|954
1JZX|1|A|G|955
1JZX|1|A|A|956
1JZX|1|A|G|957
*
1JZX|1|A|C|982
1JZX|1|A|G|983
1JZX|1|A|A|984
1JZX|1|A|G|985
1JZX|1|A|A|986
1JZX|1|A|G|987
*
1JZX|1|A|C|998
1JZX|1|A|A|999
1JZX|1|A|G|1000
1JZX|1|A|A|1001
1JZX|1|A|C|1002
1JZX|1|A|C|1003
1JZX|1|A|A|1004
1JZX|1|A|U|1005
*
1JZX|1|A|A|1171
1JZX|1|A|U|1172
1JZX|1|A|G|1173
1JZX|1|A|G|1174
1JZX|1|A|A|1175
1JZX|1|A|U|1176
1JZX|1|A|U|1177
1JZX|1|A|C|1178
*
1JZX|1|A|G|1196
1JZX|1|A|U|1197
1JZX|1|A|C|1198
1JZX|1|A|U|1199
1JZX|1|A|G|1200
1JZX|1|A|G|1201
1JZX|1|A|U|1202
1JZX|1|A|A|1203
1JZX|1|A|G|1204

Current chains

Chain A

23S rRNA

Nearby chains