J7_1JZZ_001

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAAUG*CAGCC*GAGUGAG*CGAGAG*CAGACCAU*AUGGAUUC*GUCUGGUAG

Length

50 nucleotides

Bulged bases

1JZZ|1|A|A|956, 1JZZ|1|A|U|1172, 1JZZ|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|C|830
1JZZ|1|A|G|831
1JZZ|1|A|A|832
1JZZ|1|A|A|833
1JZZ|1|A|A|834
1JZZ|1|A|U|835
1JZZ|1|A|G|836
*
1JZZ|1|A|C|847
1JZZ|1|A|A|848
1JZZ|1|A|G|849
1JZZ|1|A|C|850
1JZZ|1|A|C|851
*
1JZZ|1|A|G|951
1JZZ|1|A|A|952
1JZZ|1|A|G|953
1JZZ|1|A|U|954
1JZZ|1|A|G|955
1JZZ|1|A|A|956
1JZZ|1|A|G|957
*
1JZZ|1|A|C|982
1JZZ|1|A|G|983
1JZZ|1|A|A|984
1JZZ|1|A|G|985
1JZZ|1|A|A|986
1JZZ|1|A|G|987
*
1JZZ|1|A|C|998
1JZZ|1|A|A|999
1JZZ|1|A|G|1000
1JZZ|1|A|A|1001
1JZZ|1|A|C|1002
1JZZ|1|A|C|1003
1JZZ|1|A|A|1004
1JZZ|1|A|U|1005
*
1JZZ|1|A|A|1171
1JZZ|1|A|U|1172
1JZZ|1|A|G|1173
1JZZ|1|A|G|1174
1JZZ|1|A|A|1175
1JZZ|1|A|U|1176
1JZZ|1|A|U|1177
1JZZ|1|A|C|1178
*
1JZZ|1|A|G|1196
1JZZ|1|A|U|1197
1JZZ|1|A|C|1198
1JZZ|1|A|U|1199
1JZZ|1|A|G|1200
1JZZ|1|A|G|1201
1JZZ|1|A|U|1202
1JZZ|1|A|A|1203
1JZZ|1|A|G|1204

Current chains

Chain A

23S rRNA

Nearby chains