J7_1K01_002

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAU*AGCC*GAGUGAG*CGAGAG*CAGACCAU*AUGGAUUC*GUCUGGUAG

Length

48 nucleotides

Bulged bases

1K01|1|A|A|956, 1K01|1|A|U|1172, 1K01|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|C|830
1K01|1|A|G|831
1K01|1|A|A|832
1K01|1|A|A|833
1K01|1|A|A|834
1K01|1|A|U|835
*
1K01|1|A|A|848
1K01|1|A|G|849
1K01|1|A|C|850
1K01|1|A|C|851
*
1K01|1|A|G|951
1K01|1|A|A|952
1K01|1|A|G|953
1K01|1|A|U|954
1K01|1|A|G|955
1K01|1|A|A|956
1K01|1|A|G|957
*
1K01|1|A|C|982
1K01|1|A|G|983
1K01|1|A|A|984
1K01|1|A|G|985
1K01|1|A|A|986
1K01|1|A|G|987
*
1K01|1|A|C|998
1K01|1|A|A|999
1K01|1|A|G|1000
1K01|1|A|A|1001
1K01|1|A|C|1002
1K01|1|A|C|1003
1K01|1|A|A|1004
1K01|1|A|U|1005
*
1K01|1|A|A|1171
1K01|1|A|U|1172
1K01|1|A|G|1173
1K01|1|A|G|1174
1K01|1|A|A|1175
1K01|1|A|U|1176
1K01|1|A|U|1177
1K01|1|A|C|1178
*
1K01|1|A|G|1196
1K01|1|A|U|1197
1K01|1|A|C|1198
1K01|1|A|U|1199
1K01|1|A|G|1200
1K01|1|A|G|1201
1K01|1|A|U|1202
1K01|1|A|A|1203
1K01|1|A|G|1204

Current chains

Chain A

23S rRNA

Nearby chains