J7_1K8A_001
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG
- Length
- 36 nucleotides
- Bulged bases
- 1K8A|1|A|C|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1K8A|1|A|C|910
1K8A|1|A|G|911
1K8A|1|A|A|912
1K8A|1|A|A|913
1K8A|1|A|A|914
1K8A|1|A|C|915
*
1K8A|1|A|G|928
1K8A|1|A|A|929
1K8A|1|A|C|930
1K8A|1|A|C|931
*
1K8A|1|A|G|1039
1K8A|1|A|A|1040
1K8A|1|A|U|1041
1K8A|1|A|U|1042
1K8A|1|A|C|1043
1K8A|1|A|C|1044
1K8A|1|A|G|1045
*
1K8A|1|A|C|1069
1K8A|1|A|A|1070
1K8A|1|A|G|1071
1K8A|1|A|G|1072
1K8A|1|A|A|1073
1K8A|1|A|G|1074
*
1K8A|1|A|C|1085
1K8A|1|A|A|1086
1K8A|1|A|G|1087
1K8A|1|A|A|1088
1K8A|1|A|G|1089
*
1K8A|1|A|C|1267
1K8A|1|A|C|1268
*
1K8A|1|A|G|1290
1K8A|1|A|A|1291
1K8A|1|A|G|1292
1K8A|1|A|U|1293
1K8A|1|A|A|1294
1K8A|1|A|G|1295
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain R
- RIBOSOMAL PROTEIN L21E
- Chain X
- RIBOSOMAL PROTEIN L30
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: