J7_1KQS_001

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1KQS|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1KQS|1|0|C|910
1KQS|1|0|G|911
1KQS|1|0|A|912
1KQS|1|0|A|913
1KQS|1|0|A|914
1KQS|1|0|C|915
*
1KQS|1|0|G|928
1KQS|1|0|A|929
1KQS|1|0|C|930
1KQS|1|0|C|931
*
1KQS|1|0|G|1039
1KQS|1|0|A|1040
1KQS|1|0|U|1041
1KQS|1|0|U|1042
1KQS|1|0|C|1043
1KQS|1|0|C|1044
1KQS|1|0|G|1045
*
1KQS|1|0|C|1069
1KQS|1|0|A|1070
1KQS|1|0|G|1071
1KQS|1|0|G|1072
1KQS|1|0|A|1073
1KQS|1|0|G|1074
*
1KQS|1|0|C|1085
1KQS|1|0|A|1086
1KQS|1|0|G|1087
1KQS|1|0|A|1088
1KQS|1|0|G|1089
*
1KQS|1|0|C|1267
1KQS|1|0|C|1268
*
1KQS|1|0|G|1290
1KQS|1|0|A|1291
1KQS|1|0|G|1292
1KQS|1|0|U|1293
1KQS|1|0|A|1294
1KQS|1|0|G|1295

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L21E

Chain V

RIBOSOMAL PROTEIN L30

Chain X

RIBOSOMAL PROTEIN L32E