J7_1NJM_002

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUC*GUCUGGUAG

Length

37 nucleotides

Bulged bases

1NJM|1|0|A|956, 1NJM|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|C|830
1NJM|1|0|G|831
1NJM|1|0|A|832
1NJM|1|0|A|833
1NJM|1|0|A|834
1NJM|1|0|U|835
*
1NJM|1|0|A|848
1NJM|1|0|G|849
*
1NJM|1|0|U|954
1NJM|1|0|G|955
1NJM|1|0|A|956
1NJM|1|0|G|957
*
1NJM|1|0|C|982
1NJM|1|0|G|983
1NJM|1|0|A|984
1NJM|1|0|G|985
1NJM|1|0|A|986
1NJM|1|0|G|987
*
1NJM|1|0|C|998
1NJM|1|0|A|999
1NJM|1|0|G|1000
1NJM|1|0|A|1001
1NJM|1|0|C|1002
*
1NJM|1|0|G|1174
1NJM|1|0|A|1175
1NJM|1|0|U|1176
1NJM|1|0|U|1177
1NJM|1|0|C|1178
*
1NJM|1|0|G|1196
1NJM|1|0|U|1197
1NJM|1|0|C|1198
1NJM|1|0|U|1199
1NJM|1|0|G|1200
1NJM|1|0|G|1201
1NJM|1|0|U|1202
1NJM|1|0|A|1203
1NJM|1|0|G|1204

Current chains

Chain 0

23S ribosomal RNA

Nearby chains