J7_1NJN_002

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUC*GUCUGGUAG

Length

37 nucleotides

Bulged bases

1NJN|1|0|A|956, 1NJN|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|C|830
1NJN|1|0|G|831
1NJN|1|0|A|832
1NJN|1|0|A|833
1NJN|1|0|A|834
1NJN|1|0|U|835
*
1NJN|1|0|A|848
1NJN|1|0|G|849
*
1NJN|1|0|U|954
1NJN|1|0|G|955
1NJN|1|0|A|956
1NJN|1|0|G|957
*
1NJN|1|0|C|982
1NJN|1|0|G|983
1NJN|1|0|A|984
1NJN|1|0|G|985
1NJN|1|0|A|986
1NJN|1|0|G|987
*
1NJN|1|0|C|998
1NJN|1|0|A|999
1NJN|1|0|G|1000
1NJN|1|0|A|1001
1NJN|1|0|C|1002
*
1NJN|1|0|G|1174
1NJN|1|0|A|1175
1NJN|1|0|U|1176
1NJN|1|0|U|1177
1NJN|1|0|C|1178
*
1NJN|1|0|G|1196
1NJN|1|0|U|1197
1NJN|1|0|C|1198
1NJN|1|0|U|1199
1NJN|1|0|G|1200
1NJN|1|0|G|1201
1NJN|1|0|U|1202
1NJN|1|0|A|1203
1NJN|1|0|G|1204

Current chains

Chain 0

23S ribosomal RNA

Nearby chains