J7_1NJO_001

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAUGUA*UACAGC*GUGAG*CGAGAG*CAGAC*GAUUCA*UGUCUGGUAG

Length

47 nucleotides

Bulged bases

1NJO|1|0|A|956, 1NJO|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|C|830
1NJO|1|0|G|831
1NJO|1|0|A|832
1NJO|1|0|A|833
1NJO|1|0|A|834
1NJO|1|0|U|835
1NJO|1|0|G|836
1NJO|1|0|U|837
1NJO|1|0|A|838
*
1NJO|1|0|U|845
1NJO|1|0|A|846
1NJO|1|0|C|847
1NJO|1|0|A|848
1NJO|1|0|G|849
1NJO|1|0|C|850
*
1NJO|1|0|G|953
1NJO|1|0|U|954
1NJO|1|0|G|955
1NJO|1|0|A|956
1NJO|1|0|G|957
*
1NJO|1|0|C|982
1NJO|1|0|G|983
1NJO|1|0|A|984
1NJO|1|0|G|985
1NJO|1|0|A|986
1NJO|1|0|G|987
*
1NJO|1|0|C|998
1NJO|1|0|A|999
1NJO|1|0|G|1000
1NJO|1|0|A|1001
1NJO|1|0|C|1002
*
1NJO|1|0|G|1174
1NJO|1|0|A|1175
1NJO|1|0|U|1176
1NJO|1|0|U|1177
1NJO|1|0|C|1178
1NJO|1|0|A|1179
*
1NJO|1|0|U|1195
1NJO|1|0|G|1196
1NJO|1|0|U|1197
1NJO|1|0|C|1198
1NJO|1|0|U|1199
1NJO|1|0|G|1200
1NJO|1|0|G|1201
1NJO|1|0|U|1202
1NJO|1|0|A|1203
1NJO|1|0|G|1204

Current chains

Chain 0

23S ribosomal RNA

Nearby chains