J7_1NJP_002

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUC*GUCUGGUAG

Length

37 nucleotides

Bulged bases

1NJP|1|0|A|956, 1NJP|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|830
1NJP|1|0|G|831
1NJP|1|0|A|832
1NJP|1|0|A|833
1NJP|1|0|A|834
1NJP|1|0|U|835
*
1NJP|1|0|A|848
1NJP|1|0|G|849
*
1NJP|1|0|U|954
1NJP|1|0|G|955
1NJP|1|0|A|956
1NJP|1|0|G|957
*
1NJP|1|0|C|982
1NJP|1|0|G|983
1NJP|1|0|A|984
1NJP|1|0|G|985
1NJP|1|0|A|986
1NJP|1|0|G|987
*
1NJP|1|0|C|998
1NJP|1|0|A|999
1NJP|1|0|G|1000
1NJP|1|0|A|1001
1NJP|1|0|C|1002
*
1NJP|1|0|G|1174
1NJP|1|0|A|1175
1NJP|1|0|U|1176
1NJP|1|0|U|1177
1NJP|1|0|C|1178
*
1NJP|1|0|G|1196
1NJP|1|0|U|1197
1NJP|1|0|C|1198
1NJP|1|0|U|1199
1NJP|1|0|G|1200
1NJP|1|0|G|1201
1NJP|1|0|U|1202
1NJP|1|0|A|1203
1NJP|1|0|G|1204

Current chains

Chain 0

23S ribosomal RNA

Nearby chains