J7_1OND_001

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUCA*UGUCUGGUAGG

Length

41 nucleotides

Bulged bases

1OND|1|0|A|956, 1OND|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|C|829
1OND|1|0|C|830
1OND|1|0|G|831
1OND|1|0|A|832
1OND|1|0|A|833
1OND|1|0|A|834
1OND|1|0|U|835
*
1OND|1|0|A|848
1OND|1|0|G|849
*
1OND|1|0|U|954
1OND|1|0|G|955
1OND|1|0|A|956
1OND|1|0|G|957
*
1OND|1|0|C|982
1OND|1|0|G|983
1OND|1|0|A|984
1OND|1|0|G|985
1OND|1|0|A|986
1OND|1|0|G|987
*
1OND|1|0|C|998
1OND|1|0|A|999
1OND|1|0|G|1000
1OND|1|0|A|1001
1OND|1|0|C|1002
*
1OND|1|0|G|1174
1OND|1|0|A|1175
1OND|1|0|U|1176
1OND|1|0|U|1177
1OND|1|0|C|1178
1OND|1|0|A|1179
*
1OND|1|0|U|1195
1OND|1|0|G|1196
1OND|1|0|U|1197
1OND|1|0|C|1198
1OND|1|0|U|1199
1OND|1|0|G|1200
1OND|1|0|G|1201
1OND|1|0|U|1202
1OND|1|0|A|1203
1OND|1|0|G|1204
1OND|1|0|G|1205

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains