J7_1Q7Y_001

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1Q7Y|1|A|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Q7Y|1|A|C|910
1Q7Y|1|A|G|911
1Q7Y|1|A|A|912
1Q7Y|1|A|A|913
1Q7Y|1|A|A|914
1Q7Y|1|A|C|915
*
1Q7Y|1|A|G|928
1Q7Y|1|A|A|929
1Q7Y|1|A|C|930
1Q7Y|1|A|C|931
*
1Q7Y|1|A|G|1039
1Q7Y|1|A|A|1040
1Q7Y|1|A|U|1041
1Q7Y|1|A|U|1042
1Q7Y|1|A|C|1043
1Q7Y|1|A|C|1044
1Q7Y|1|A|G|1045
*
1Q7Y|1|A|C|1069
1Q7Y|1|A|A|1070
1Q7Y|1|A|G|1071
1Q7Y|1|A|G|1072
1Q7Y|1|A|A|1073
1Q7Y|1|A|G|1074
*
1Q7Y|1|A|C|1085
1Q7Y|1|A|A|1086
1Q7Y|1|A|G|1087
1Q7Y|1|A|A|1088
1Q7Y|1|A|G|1089
*
1Q7Y|1|A|C|1267
1Q7Y|1|A|C|1268
*
1Q7Y|1|A|G|1290
1Q7Y|1|A|A|1291
1Q7Y|1|A|G|1292
1Q7Y|1|A|U|1293
1Q7Y|1|A|A|1294
1Q7Y|1|A|G|1295

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L15P

Chain X

50S ribosomal protein L30P

Chain Z

50S ribosomal protein L32E