J7_1QVF_001

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1QVF|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVF|1|0|C|910
1QVF|1|0|G|911
1QVF|1|0|A|912
1QVF|1|0|A|913
1QVF|1|0|A|914
1QVF|1|0|C|915
*
1QVF|1|0|G|928
1QVF|1|0|A|929
1QVF|1|0|C|930
1QVF|1|0|C|931
*
1QVF|1|0|G|1039
1QVF|1|0|A|1040
1QVF|1|0|U|1041
1QVF|1|0|U|1042
1QVF|1|0|C|1043
1QVF|1|0|C|1044
1QVF|1|0|G|1045
*
1QVF|1|0|C|1069
1QVF|1|0|A|1070
1QVF|1|0|G|1071
1QVF|1|0|G|1072
1QVF|1|0|A|1073
1QVF|1|0|G|1074
*
1QVF|1|0|C|1085
1QVF|1|0|A|1086
1QVF|1|0|G|1087
1QVF|1|0|A|1088
1QVF|1|0|G|1089
*
1QVF|1|0|C|1267
1QVF|1|0|C|1268
*
1QVF|1|0|G|1290
1QVF|1|0|A|1291
1QVF|1|0|G|1292
1QVF|1|0|U|1293
1QVF|1|0|A|1294
1QVF|1|0|G|1295

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L15P

Chain P

50S ribosomal protein L21e

Chain V

50S ribosomal protein L30P

Chain X

50S ribosomal protein L32E