J7_1QVG_001

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1QVG|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVG|1|0|C|910
1QVG|1|0|G|911
1QVG|1|0|A|912
1QVG|1|0|A|913
1QVG|1|0|A|914
1QVG|1|0|C|915
*
1QVG|1|0|G|928
1QVG|1|0|A|929
1QVG|1|0|C|930
1QVG|1|0|C|931
*
1QVG|1|0|G|1039
1QVG|1|0|A|1040
1QVG|1|0|U|1041
1QVG|1|0|U|1042
1QVG|1|0|C|1043
1QVG|1|0|C|1044
1QVG|1|0|G|1045
*
1QVG|1|0|C|1069
1QVG|1|0|A|1070
1QVG|1|0|G|1071
1QVG|1|0|G|1072
1QVG|1|0|A|1073
1QVG|1|0|G|1074
*
1QVG|1|0|C|1085
1QVG|1|0|A|1086
1QVG|1|0|G|1087
1QVG|1|0|A|1088
1QVG|1|0|G|1089
*
1QVG|1|0|C|1267
1QVG|1|0|C|1268
*
1QVG|1|0|G|1290
1QVG|1|0|A|1291
1QVG|1|0|G|1292
1QVG|1|0|U|1293
1QVG|1|0|A|1294
1QVG|1|0|G|1295

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L15P

Chain P

50S ribosomal protein L21e

Chain V

50S ribosomal protein L30P

Chain X

50S ribosomal protein L32E