Loop J7_1SM1

3D structure

PDB id: 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Experimental method: X-RAY DIFFRACTION
Resolution: 3.42 Å

Loop

Sequence: CGAAAUG*CAGC*GUGAG*CGAGAG*CAGAC*GAUUCAA*UUGUCUGGUAG
Length: 45 nucleotides
Bulged bases: 1SM1|1|0|A|956, 1SM1|1|0|G|1000, 1SM1|1|0|A|1001
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1SM1|1|0|C|830
1SM1|1|0|G|831
1SM1|1|0|A|832
1SM1|1|0|A|833
1SM1|1|0|A|834
1SM1|1|0|U|835
1SM1|1|0|G|836
*
1SM1|1|0|C|847
1SM1|1|0|A|848
1SM1|1|0|G|849
1SM1|1|0|C|850
*
1SM1|1|0|G|953
1SM1|1|0|U|954
1SM1|1|0|G|955
1SM1|1|0|A|956
1SM1|1|0|G|957
*
1SM1|1|0|C|982
1SM1|1|0|G|983
1SM1|1|0|A|984
1SM1|1|0|G|985
1SM1|1|0|A|986
1SM1|1|0|G|987
*
1SM1|1|0|C|998
1SM1|1|0|A|999
1SM1|1|0|G|1000
1SM1|1|0|A|1001
1SM1|1|0|C|1002
*
1SM1|1|0|G|1174
1SM1|1|0|A|1175
1SM1|1|0|U|1176
1SM1|1|0|U|1177
1SM1|1|0|C|1178
1SM1|1|0|A|1179
1SM1|1|0|A|1180
*
1SM1|1|0|U|1194
1SM1|1|0|U|1195
1SM1|1|0|G|1196
1SM1|1|0|U|1197
1SM1|1|0|C|1198
1SM1|1|0|U|1199
1SM1|1|0|G|1200
1SM1|1|0|G|1201
1SM1|1|0|U|1202
1SM1|1|0|A|1203
1SM1|1|0|G|1204

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

Chain 3: 50S RIBOSOMAL PROTEIN L35
Chain 9: 5S ribosomal RNA; 5S rRNA
Chain J: 50S RIBOSOMAL PROTEIN L15
Chain O: 50S RIBOSOMAL PROTEIN L20
Chain P: 50S RIBOSOMAL PROTEIN L21
Chain X: 50S RIBOSOMAL PROTEIN L30

J7_1SM1_001