J7_1VQ8_001
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG
- Length
- 36 nucleotides
- Bulged bases
- 1VQ8|1|0|C|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQ8|1|0|C|910
1VQ8|1|0|G|911
1VQ8|1|0|A|912
1VQ8|1|0|A|913
1VQ8|1|0|A|914
1VQ8|1|0|C|915
*
1VQ8|1|0|G|928
1VQ8|1|0|A|929
1VQ8|1|0|C|930
1VQ8|1|0|C|931
*
1VQ8|1|0|G|1039
1VQ8|1|0|A|1040
1VQ8|1|0|U|1041
1VQ8|1|0|U|1042
1VQ8|1|0|C|1043
1VQ8|1|0|C|1044
1VQ8|1|0|G|1045
*
1VQ8|1|0|C|1069
1VQ8|1|0|A|1070
1VQ8|1|0|G|1071
1VQ8|1|0|G|1072
1VQ8|1|0|A|1073
1VQ8|1|0|G|1074
*
1VQ8|1|0|C|1085
1VQ8|1|0|A|1086
1VQ8|1|0|G|1087
1VQ8|1|0|A|1088
1VQ8|1|0|G|1089
*
1VQ8|1|0|C|1267
1VQ8|1|0|C|1268
*
1VQ8|1|0|G|1290
1VQ8|1|0|A|1291
1VQ8|1|0|G|1292
1VQ8|1|0|U|1293
1VQ8|1|0|A|1294
1VQ8|1|0|G|1295
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15P
- Chain Q
- 50S ribosomal protein L21e
- Chain W
- 50S ribosomal protein L30P
- Chain Y
- 50S ribosomal protein L32E
Coloring options: