J7_1VQM_001
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG
- Length
- 36 nucleotides
- Bulged bases
- 1VQM|1|0|C|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQM|1|0|C|910
1VQM|1|0|G|911
1VQM|1|0|A|912
1VQM|1|0|A|913
1VQM|1|0|A|914
1VQM|1|0|C|915
*
1VQM|1|0|G|928
1VQM|1|0|A|929
1VQM|1|0|C|930
1VQM|1|0|C|931
*
1VQM|1|0|G|1039
1VQM|1|0|A|1040
1VQM|1|0|U|1041
1VQM|1|0|U|1042
1VQM|1|0|C|1043
1VQM|1|0|C|1044
1VQM|1|0|G|1045
*
1VQM|1|0|C|1069
1VQM|1|0|A|1070
1VQM|1|0|G|1071
1VQM|1|0|G|1072
1VQM|1|0|A|1073
1VQM|1|0|G|1074
*
1VQM|1|0|C|1085
1VQM|1|0|A|1086
1VQM|1|0|G|1087
1VQM|1|0|A|1088
1VQM|1|0|G|1089
*
1VQM|1|0|C|1267
1VQM|1|0|C|1268
*
1VQM|1|0|G|1290
1VQM|1|0|A|1291
1VQM|1|0|G|1292
1VQM|1|0|U|1293
1VQM|1|0|A|1294
1VQM|1|0|G|1295
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15P
- Chain W
- 50S ribosomal protein L30P
- Chain Y
- 50S ribosomal protein L32E
Coloring options: