3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG
Length
36 nucleotides
Bulged bases
1VQO|1|0|C|1044
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VQO|1|0|C|910
1VQO|1|0|G|911
1VQO|1|0|A|912
1VQO|1|0|A|913
1VQO|1|0|A|914
1VQO|1|0|C|915
*
1VQO|1|0|G|928
1VQO|1|0|A|929
1VQO|1|0|C|930
1VQO|1|0|C|931
*
1VQO|1|0|G|1039
1VQO|1|0|A|1040
1VQO|1|0|U|1041
1VQO|1|0|U|1042
1VQO|1|0|C|1043
1VQO|1|0|C|1044
1VQO|1|0|G|1045
*
1VQO|1|0|C|1069
1VQO|1|0|A|1070
1VQO|1|0|G|1071
1VQO|1|0|G|1072
1VQO|1|0|A|1073
1VQO|1|0|G|1074
*
1VQO|1|0|C|1085
1VQO|1|0|A|1086
1VQO|1|0|G|1087
1VQO|1|0|A|1088
1VQO|1|0|G|1089
*
1VQO|1|0|C|1267
1VQO|1|0|C|1268
*
1VQO|1|0|G|1290
1VQO|1|0|A|1291
1VQO|1|0|G|1292
1VQO|1|0|U|1293
1VQO|1|0|A|1294
1VQO|1|0|G|1295

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15P
Chain W
50S ribosomal protein L30P
Chain Y
50S ribosomal protein L32E

Coloring options:

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