Loop J7_1VX3

3D structure

PDB id: 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: CCGAAGUUUC*GAUAGCUG*CUAGUGGGCCACU*ACUGGCGCUGCG*CGAACGCC*GGCCGUC*GACGAGUAGG
Length: 68 nucleotides
Bulged bases: 1VX3|1|5|G|2278
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1VX3|1|5|C|1665
1VX3|1|5|C|1666
1VX3|1|5|G|1667
1VX3|1|5|A|1668
1VX3|1|5|A|1669
1VX3|1|5|G|1670
1VX3|1|5|U|1671
1VX3|1|5|U|1672
1VX3|1|5|U|1673
1VX3|1|5|C|1674
*
1VX3|1|5|G|1681
1VX3|1|5|A|1682
1VX3|1|5|U|1683
1VX3|1|5|A|1684
1VX3|1|5|G|1685
1VX3|1|5|C|1686
1VX3|1|5|U|1687
1VX3|1|5|G|1688
*
1VX3|1|5|C|1848
1VX3|1|5|U|1849
1VX3|1|5|A|1850
1VX3|1|5|G|1851
1VX3|1|5|U|1852
1VX3|1|5|G|1853
1VX3|1|5|G|1854
1VX3|1|5|G|1855
1VX3|1|5|C|1856
1VX3|1|5|C|1857
1VX3|1|5|A|1858
1VX3|1|5|C|1859
1VX3|1|5|U|1860
*
1VX3|1|5|A|1874
1VX3|1|5|C|1875
1VX3|1|5|U|1876
1VX3|1|5|G|1877
1VX3|1|5|G|1878
1VX3|1|5|C|1879
1VX3|1|5|G|1880
1VX3|1|5|C|1881
1VX3|1|5|U|1882
1VX3|1|5|G|1883
1VX3|1|5|C|1884
1VX3|1|5|G|1885
*
1VX3|1|5|C|1894
1VX3|1|5|G|1895
1VX3|1|5|A|1896
1VX3|1|5|A|1897
1VX3|1|5|C|1898
1VX3|1|5|G|1899
1VX3|1|5|C|1900
1VX3|1|5|C|1901
*
1VX3|1|5|G|2075
1VX3|1|5|G|2076
1VX3|1|5|C|2077
1VX3|1|5|C|2078
1VX3|1|5|G|2079
1VX3|1|5|U|2080
1VX3|1|5|C|2081
*
1VX3|1|5|G|2275
1VX3|1|5|A|2276
1VX3|1|5|C|2277
1VX3|1|5|G|2278
1VX3|1|5|A|2279
1VX3|1|5|G|2280
1VX3|1|5|U|2281
1VX3|1|5|A|2282
1VX3|1|5|G|2283
1VX3|1|5|G|2284

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain 7: 5S ribosomal RNA; 5S rRNA

J7_1VX3_001