J7_1VY4_001

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

1VY4|1|BA|G|530, 1VY4|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|BA|A|8
1VY4|1|BA|U|9
1VY4|1|BA|G|10
1VY4|1|BA|G|11
1VY4|1|BA|U|12
1VY4|1|BA|A|13
1VY4|1|BA|A|14
1VY4|1|BA|G|15
*
1VY4|1|BA|U|525
1VY4|1|BA|A|526
1VY4|1|BA|C|527
1VY4|1|BA|A|528
1VY4|1|BA|A|529
1VY4|1|BA|G|530
1VY4|1|BA|C|531
*
1VY4|1|BA|G|2018
1VY4|1|BA|A|2019
1VY4|1|BA|A|2020
1VY4|1|BA|C|2021
1VY4|1|BA|U|2022
1VY4|1|BA|G|2023
*
1VY4|1|BA|C|2040
1VY4|1|BA|U|2041
1VY4|1|BA|A|2042
1VY4|1|BA|C|2043
*
1VY4|1|BA|G|2625
1VY4|1|BA|C|2626
1VY4|1|BA|G|2627
1VY4|1|BA|C|2628
1VY4|1|BA|A|2629
1VY4|1|BA|G|2630
*
1VY4|1|BA|C|2788
1VY4|1|BA|C|2789
*
1VY4|1|BA|G|2894
1VY4|1|BA|U|2895

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22