J7_1VY4_004
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 1VY4|1|DA|A|945, 1VY4|1|DA|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY4|1|DA|C|817
1VY4|1|DA|G|818
1VY4|1|DA|A|819
1VY4|1|DA|A|820
1VY4|1|DA|A|821
1VY4|1|DA|U|822
*
1VY4|1|DA|A|835
1VY4|1|DA|G|836
*
1VY4|1|DA|U|943
1VY4|1|DA|G|944
1VY4|1|DA|A|945
1VY4|1|DA|G|946
*
1VY4|1|DA|C|971
1VY4|1|DA|G|972
1VY4|1|DA|A|973
1VY4|1|DA|G|974
1VY4|1|DA|C|975
1VY4|1|DA|G|975|||A
1VY4|1|DA|C|976
*
1VY4|1|DA|G|987
1VY4|1|DA|A|988
1VY4|1|DA|G|989
1VY4|1|DA|A|990
1VY4|1|DA|C|991
*
1VY4|1|DA|G|1163
1VY4|1|DA|G|1164
*
1VY4|1|DA|C|1185
1VY4|1|DA|G|1186
1VY4|1|DA|G|1187
1VY4|1|DA|U|1188
1VY4|1|DA|A|1189
1VY4|1|DA|G|1190
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D3
- 50S ribosomal protein L30
- Chain D8
- 50S ribosomal protein L35
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DP
- 50S ribosomal protein L15
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
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