J7_1VY5_001

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

1VY5|1|BA|G|530, 1VY5|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|BA|A|8
1VY5|1|BA|U|9
1VY5|1|BA|G|10
1VY5|1|BA|G|11
1VY5|1|BA|U|12
1VY5|1|BA|A|13
1VY5|1|BA|A|14
1VY5|1|BA|G|15
*
1VY5|1|BA|U|525
1VY5|1|BA|A|526
1VY5|1|BA|C|527
1VY5|1|BA|A|528
1VY5|1|BA|A|529
1VY5|1|BA|G|530
1VY5|1|BA|C|531
*
1VY5|1|BA|G|2018
1VY5|1|BA|A|2019
1VY5|1|BA|A|2020
1VY5|1|BA|C|2021
1VY5|1|BA|U|2022
1VY5|1|BA|G|2023
*
1VY5|1|BA|C|2040
1VY5|1|BA|U|2041
1VY5|1|BA|A|2042
1VY5|1|BA|C|2043
*
1VY5|1|BA|G|2625
1VY5|1|BA|C|2626
1VY5|1|BA|G|2627
1VY5|1|BA|C|2628
1VY5|1|BA|A|2629
1VY5|1|BA|G|2630
*
1VY5|1|BA|C|2788
1VY5|1|BA|C|2789
*
1VY5|1|BA|G|2894
1VY5|1|BA|U|2895

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22