J7_1VY5_002

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

1VY5|1|BA|A|945, 1VY5|1|BA|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|BA|C|817
1VY5|1|BA|G|818
1VY5|1|BA|A|819
1VY5|1|BA|A|820
1VY5|1|BA|A|821
1VY5|1|BA|U|822
*
1VY5|1|BA|A|835
1VY5|1|BA|G|836
*
1VY5|1|BA|U|943
1VY5|1|BA|G|944
1VY5|1|BA|A|945
1VY5|1|BA|G|946
*
1VY5|1|BA|C|971
1VY5|1|BA|G|972
1VY5|1|BA|A|973
1VY5|1|BA|G|974
1VY5|1|BA|C|975
1VY5|1|BA|G|975|||A
1VY5|1|BA|C|976
*
1VY5|1|BA|G|987
1VY5|1|BA|A|988
1VY5|1|BA|G|989
1VY5|1|BA|A|990
1VY5|1|BA|C|991
*
1VY5|1|BA|G|1163
1VY5|1|BA|G|1164
*
1VY5|1|BA|C|1185
1VY5|1|BA|G|1186
1VY5|1|BA|G|1187
1VY5|1|BA|U|1188
1VY5|1|BA|A|1189
1VY5|1|BA|G|1190

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain B8

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L15

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21