J7_1W2B_001

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1W2B|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1W2B|1|0|C|910
1W2B|1|0|G|911
1W2B|1|0|A|912
1W2B|1|0|A|913
1W2B|1|0|A|914
1W2B|1|0|C|915
*
1W2B|1|0|G|928
1W2B|1|0|A|929
1W2B|1|0|C|930
1W2B|1|0|C|931
*
1W2B|1|0|G|1039
1W2B|1|0|A|1040
1W2B|1|0|U|1041
1W2B|1|0|U|1042
1W2B|1|0|C|1043
1W2B|1|0|C|1044
1W2B|1|0|G|1045
*
1W2B|1|0|C|1069
1W2B|1|0|A|1070
1W2B|1|0|G|1071
1W2B|1|0|G|1072
1W2B|1|0|A|1073
1W2B|1|0|G|1074
*
1W2B|1|0|C|1085
1W2B|1|0|A|1086
1W2B|1|0|G|1087
1W2B|1|0|A|1088
1W2B|1|0|G|1089
*
1W2B|1|0|C|1267
1W2B|1|0|C|1268
*
1W2B|1|0|G|1290
1W2B|1|0|A|1291
1W2B|1|0|G|1292
1W2B|1|0|U|1293
1W2B|1|0|A|1294
1W2B|1|0|G|1295

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S RIBOSOMAL PROTEIN L15P

Chain V

50S RIBOSOMAL PROTEIN L30P

Chain X

50S RIBOSOMAL PROTEIN L32E