J7_1Y69_001

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCGAAAU*AG*UGAG*CGAGAG*CAGAC*GAUUCAA*UUGUCUGGUAGG

Length

43 nucleotides

Bulged bases

1Y69|1|0|A|956, 1Y69|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|C|829
1Y69|1|0|C|830
1Y69|1|0|G|831
1Y69|1|0|A|832
1Y69|1|0|A|833
1Y69|1|0|A|834
1Y69|1|0|U|835
*
1Y69|1|0|A|848
1Y69|1|0|G|849
*
1Y69|1|0|U|954
1Y69|1|0|G|955
1Y69|1|0|A|956
1Y69|1|0|G|957
*
1Y69|1|0|C|982
1Y69|1|0|G|983
1Y69|1|0|A|984
1Y69|1|0|G|985
1Y69|1|0|A|986
1Y69|1|0|G|987
*
1Y69|1|0|C|998
1Y69|1|0|A|999
1Y69|1|0|G|1000
1Y69|1|0|A|1001
1Y69|1|0|C|1002
*
1Y69|1|0|G|1174
1Y69|1|0|A|1175
1Y69|1|0|U|1176
1Y69|1|0|U|1177
1Y69|1|0|C|1178
1Y69|1|0|A|1179
1Y69|1|0|A|1180
*
1Y69|1|0|U|1194
1Y69|1|0|U|1195
1Y69|1|0|G|1196
1Y69|1|0|U|1197
1Y69|1|0|C|1198
1Y69|1|0|U|1199
1Y69|1|0|G|1200
1Y69|1|0|G|1201
1Y69|1|0|U|1202
1Y69|1|0|A|1203
1Y69|1|0|G|1204
1Y69|1|0|G|1205

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA