J7_1YJ9_001

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

1YJ9|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1YJ9|1|0|C|910
1YJ9|1|0|G|911
1YJ9|1|0|A|912
1YJ9|1|0|A|913
1YJ9|1|0|A|914
1YJ9|1|0|C|915
*
1YJ9|1|0|G|928
1YJ9|1|0|A|929
1YJ9|1|0|C|930
1YJ9|1|0|C|931
*
1YJ9|1|0|G|1039
1YJ9|1|0|A|1040
1YJ9|1|0|U|1041
1YJ9|1|0|U|1042
1YJ9|1|0|C|1043
1YJ9|1|0|C|1044
1YJ9|1|0|G|1045
*
1YJ9|1|0|C|1069
1YJ9|1|0|A|1070
1YJ9|1|0|G|1071
1YJ9|1|0|G|1072
1YJ9|1|0|A|1073
1YJ9|1|0|G|1074
*
1YJ9|1|0|C|1085
1YJ9|1|0|A|1086
1YJ9|1|0|G|1087
1YJ9|1|0|A|1088
1YJ9|1|0|G|1089
*
1YJ9|1|0|C|1267
1YJ9|1|0|C|1268
*
1YJ9|1|0|G|1290
1YJ9|1|0|A|1291
1YJ9|1|0|G|1292
1YJ9|1|0|U|1293
1YJ9|1|0|A|1294
1YJ9|1|0|G|1295

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15P

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32E