J7_2D3O_001

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAAAUG*CAG*UGAG*CGAGAG*CAGAC*GAUUCAACUC*GAGUUGUCUGGUAG

Length

49 nucleotides

Bulged bases

2D3O|1|0|A|956, 2D3O|1|0|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|C|830
2D3O|1|0|G|831
2D3O|1|0|A|832
2D3O|1|0|A|833
2D3O|1|0|A|834
2D3O|1|0|U|835
2D3O|1|0|G|836
*
2D3O|1|0|C|847
2D3O|1|0|A|848
2D3O|1|0|G|849
*
2D3O|1|0|U|954
2D3O|1|0|G|955
2D3O|1|0|A|956
2D3O|1|0|G|957
*
2D3O|1|0|C|982
2D3O|1|0|G|983
2D3O|1|0|A|984
2D3O|1|0|G|985
2D3O|1|0|A|986
2D3O|1|0|G|987
*
2D3O|1|0|C|998
2D3O|1|0|A|999
2D3O|1|0|G|1000
2D3O|1|0|A|1001
2D3O|1|0|C|1002
*
2D3O|1|0|G|1174
2D3O|1|0|A|1175
2D3O|1|0|U|1176
2D3O|1|0|U|1177
2D3O|1|0|C|1178
2D3O|1|0|A|1179
2D3O|1|0|A|1180
2D3O|1|0|C|1181
2D3O|1|0|U|1182
2D3O|1|0|C|1183
*
2D3O|1|0|G|1191
2D3O|1|0|A|1192
2D3O|1|0|G|1193
2D3O|1|0|U|1194
2D3O|1|0|U|1195
2D3O|1|0|G|1196
2D3O|1|0|U|1197
2D3O|1|0|C|1198
2D3O|1|0|U|1199
2D3O|1|0|G|1200
2D3O|1|0|G|1201
2D3O|1|0|U|1202
2D3O|1|0|A|1203
2D3O|1|0|G|1204

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains