J7_2O44_001

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAU*AGC*GUGAG*CGAGAG*CAGAC*GAUUCA*UGUCUGGUAG

Length

41 nucleotides

Bulged bases

2O44|1|A|A|956, 2O44|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|C|830
2O44|1|A|G|831
2O44|1|A|A|832
2O44|1|A|A|833
2O44|1|A|A|834
2O44|1|A|U|835
*
2O44|1|A|A|848
2O44|1|A|G|849
2O44|1|A|C|850
*
2O44|1|A|G|953
2O44|1|A|U|954
2O44|1|A|G|955
2O44|1|A|A|956
2O44|1|A|G|957
*
2O44|1|A|C|982
2O44|1|A|G|983
2O44|1|A|A|984
2O44|1|A|G|985
2O44|1|A|A|986
2O44|1|A|G|987
*
2O44|1|A|C|998
2O44|1|A|A|999
2O44|1|A|G|1000
2O44|1|A|A|1001
2O44|1|A|C|1002
*
2O44|1|A|G|1174
2O44|1|A|A|1175
2O44|1|A|U|1176
2O44|1|A|U|1177
2O44|1|A|C|1178
2O44|1|A|A|1179
*
2O44|1|A|U|1195
2O44|1|A|G|1196
2O44|1|A|U|1197
2O44|1|A|C|1198
2O44|1|A|U|1199
2O44|1|A|G|1200
2O44|1|A|G|1201
2O44|1|A|U|1202
2O44|1|A|A|1203
2O44|1|A|G|1204

Current chains

Chain A

23S rRNA

Nearby chains