J7_2O45_001

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCCCGAAAUGU*ACAG*UGAG*CGAGAG*CAGAC*GAUUC*GUCUGGUAGGGG

Length

47 nucleotides

Bulged bases

2O45|1|A|G|955, 2O45|1|A|A|956, 2O45|1|A|U|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|827
2O45|1|A|C|828
2O45|1|A|C|829
2O45|1|A|C|830
2O45|1|A|G|831
2O45|1|A|A|832
2O45|1|A|A|833
2O45|1|A|A|834
2O45|1|A|U|835
2O45|1|A|G|836
2O45|1|A|U|837
*
2O45|1|A|A|846
2O45|1|A|C|847
2O45|1|A|A|848
2O45|1|A|G|849
*
2O45|1|A|U|954
2O45|1|A|G|955
2O45|1|A|A|956
2O45|1|A|G|957
*
2O45|1|A|C|982
2O45|1|A|G|983
2O45|1|A|A|984
2O45|1|A|G|985
2O45|1|A|A|986
2O45|1|A|G|987
*
2O45|1|A|C|998
2O45|1|A|A|999
2O45|1|A|G|1000
2O45|1|A|A|1001
2O45|1|A|C|1002
*
2O45|1|A|G|1174
2O45|1|A|A|1175
2O45|1|A|U|1176
2O45|1|A|U|1177
2O45|1|A|C|1178
*
2O45|1|A|G|1196
2O45|1|A|U|1197
2O45|1|A|C|1198
2O45|1|A|U|1199
2O45|1|A|G|1200
2O45|1|A|G|1201
2O45|1|A|U|1202
2O45|1|A|A|1203
2O45|1|A|G|1204
2O45|1|A|G|1205
2O45|1|A|G|1206
2O45|1|A|G|1207

Current chains

Chain A

23S rRNA

Nearby chains