J7_2ZJP_001

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

2ZJP|1|X|G|540, 2ZJP|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|A|8
2ZJP|1|X|U|9
2ZJP|1|X|A|10
2ZJP|1|X|G|11
2ZJP|1|X|U|12
2ZJP|1|X|A|13
2ZJP|1|X|A|14
2ZJP|1|X|G|15
*
2ZJP|1|X|U|535
2ZJP|1|X|A|536
2ZJP|1|X|C|537
2ZJP|1|X|A|538
2ZJP|1|X|A|539
2ZJP|1|X|G|540
2ZJP|1|X|C|541
*
2ZJP|1|X|G|2001
2ZJP|1|X|A|2002
2ZJP|1|X|A|2003
2ZJP|1|X|U|2004
2ZJP|1|X|U|2005
2ZJP|1|X|G|2006
*
2ZJP|1|X|C|2023
2ZJP|1|X|U|2024
2ZJP|1|X|A|2025
2ZJP|1|X|C|2026
*
2ZJP|1|X|G|2604
2ZJP|1|X|C|2605
2ZJP|1|X|G|2606
2ZJP|1|X|C|2607
2ZJP|1|X|A|2608
2ZJP|1|X|G|2609
*
2ZJP|1|X|C|2768
2ZJP|1|X|C|2769
*
2ZJP|1|X|G|2868
2ZJP|1|X|U|2869

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain G

50S RIBOSOMAL PROTEIN L13

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22

Chain Y

50S RIBOSOMAL PROTEIN L32