J7_2ZJR_001

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

2ZJR|1|X|G|540, 2ZJR|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJR|1|X|A|8
2ZJR|1|X|U|9
2ZJR|1|X|A|10
2ZJR|1|X|G|11
2ZJR|1|X|U|12
2ZJR|1|X|A|13
2ZJR|1|X|A|14
2ZJR|1|X|G|15
*
2ZJR|1|X|U|535
2ZJR|1|X|A|536
2ZJR|1|X|C|537
2ZJR|1|X|A|538
2ZJR|1|X|A|539
2ZJR|1|X|G|540
2ZJR|1|X|C|541
*
2ZJR|1|X|G|2001
2ZJR|1|X|A|2002
2ZJR|1|X|A|2003
2ZJR|1|X|U|2004
2ZJR|1|X|U|2005
2ZJR|1|X|G|2006
*
2ZJR|1|X|C|2023
2ZJR|1|X|U|2024
2ZJR|1|X|A|2025
2ZJR|1|X|C|2026
*
2ZJR|1|X|G|2604
2ZJR|1|X|C|2605
2ZJR|1|X|G|2606
2ZJR|1|X|C|2607
2ZJR|1|X|A|2608
2ZJR|1|X|G|2609
*
2ZJR|1|X|C|2768
2ZJR|1|X|C|2769
*
2ZJR|1|X|G|2868
2ZJR|1|X|U|2869

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32