J7_3CC2_001

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAC*GACC*GAUUCCG*CAGGAG*CAGAG*CC*GAGUAG

Length

36 nucleotides

Bulged bases

3CC2|1|0|C|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CC2|1|0|C|910
3CC2|1|0|G|911
3CC2|1|0|A|912
3CC2|1|0|A|913
3CC2|1|0|A|914
3CC2|1|0|C|915
*
3CC2|1|0|G|928
3CC2|1|0|A|929
3CC2|1|0|C|930
3CC2|1|0|C|931
*
3CC2|1|0|G|1039
3CC2|1|0|A|1040
3CC2|1|0|U|1041
3CC2|1|0|U|1042
3CC2|1|0|C|1043
3CC2|1|0|C|1044
3CC2|1|0|G|1045
*
3CC2|1|0|C|1069
3CC2|1|0|A|1070
3CC2|1|0|G|1071
3CC2|1|0|G|1072
3CC2|1|0|A|1073
3CC2|1|0|G|1074
*
3CC2|1|0|C|1085
3CC2|1|0|A|1086
3CC2|1|0|G|1087
3CC2|1|0|A|1088
3CC2|1|0|G|1089
*
3CC2|1|0|C|1267
3CC2|1|0|C|1268
*
3CC2|1|0|G|1290
3CC2|1|0|A|1291
3CC2|1|0|G|1292
3CC2|1|0|U|1293
3CC2|1|0|A|1294
3CC2|1|0|G|1295

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e