J7_3CF5_002
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 3CF5|1|X|G|955, 3CF5|1|X|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3CF5|1|X|C|830
3CF5|1|X|G|831
3CF5|1|X|A|832
3CF5|1|X|A|833
3CF5|1|X|A|834
3CF5|1|X|U|835
*
3CF5|1|X|A|848
3CF5|1|X|G|849
*
3CF5|1|X|U|954
3CF5|1|X|G|955
3CF5|1|X|A|956
3CF5|1|X|G|957
*
3CF5|1|X|C|982
3CF5|1|X|G|983
3CF5|1|X|A|984
3CF5|1|X|G|985
3CF5|1|X|A|986
3CF5|1|X|G|987
*
3CF5|1|X|C|998
3CF5|1|X|A|999
3CF5|1|X|G|1000
3CF5|1|X|A|1001
3CF5|1|X|C|1002
*
3CF5|1|X|G|1174
3CF5|1|X|A|1175
*
3CF5|1|X|U|1199
3CF5|1|X|G|1200
3CF5|1|X|G|1201
3CF5|1|X|U|1202
3CF5|1|X|A|1203
3CF5|1|X|G|1204
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain I
- 50S RIBOSOMAL PROTEIN L15
- Chain N
- 50S RIBOSOMAL PROTEIN L20
- Chain O
- 50S RIBOSOMAL PROTEIN L21
- Chain W
- 50S RIBOSOMAL PROTEIN L30
- Chain Z
- 5S ribosomal RNA; 5S rRNA
Coloring options: