J7_3CF5_003

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

3CF5|1|X|G|540, 3CF5|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CF5|1|X|A|8
3CF5|1|X|U|9
3CF5|1|X|A|10
3CF5|1|X|G|11
3CF5|1|X|U|12
3CF5|1|X|A|13
3CF5|1|X|A|14
3CF5|1|X|G|15
*
3CF5|1|X|U|535
3CF5|1|X|A|536
3CF5|1|X|C|537
3CF5|1|X|A|538
3CF5|1|X|A|539
3CF5|1|X|G|540
3CF5|1|X|C|541
*
3CF5|1|X|G|2001
3CF5|1|X|A|2002
3CF5|1|X|A|2003
3CF5|1|X|U|2004
3CF5|1|X|U|2005
3CF5|1|X|G|2006
*
3CF5|1|X|C|2023
3CF5|1|X|U|2024
3CF5|1|X|A|2025
3CF5|1|X|C|2026
*
3CF5|1|X|G|2604
3CF5|1|X|C|2605
3CF5|1|X|G|2606
3CF5|1|X|C|2607
3CF5|1|X|A|2608
3CF5|1|X|G|2609
*
3CF5|1|X|C|2768
3CF5|1|X|C|2769
*
3CF5|1|X|G|2868
3CF5|1|X|U|2869

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain G

50S RIBOSOMAL PROTEIN L13

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22

Chain Y

50S RIBOSOMAL PROTEIN L32