3D structure

PDB id
3J5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmBL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
6.6 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
3J5L|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J5L|1|A|C|8
3J5L|1|A|G|9
3J5L|1|A|A|10
3J5L|1|A|C|11
3J5L|1|A|U|12
3J5L|1|A|A|13
3J5L|1|A|A|14
3J5L|1|A|G|15
*
3J5L|1|A|U|525
3J5L|1|A|A|526
3J5L|1|A|C|527
3J5L|1|A|A|528
3J5L|1|A|A|529
3J5L|1|A|G|530
3J5L|1|A|C|531
*
3J5L|1|A|G|2018
3J5L|1|A|A|2019
3J5L|1|A|A|2020
3J5L|1|A|C|2021
3J5L|1|A|U|2022
3J5L|1|A|C|2023
*
3J5L|1|A|G|2040
3J5L|1|A|U|2041
3J5L|1|A|A|2042
3J5L|1|A|C|2043
*
3J5L|1|A|G|2625
3J5L|1|A|C|2626
3J5L|1|A|G|2627
3J5L|1|A|C|2628
3J5L|1|A|U|2629
3J5L|1|A|G|2630
*
3J5L|1|A|C|2788
3J5L|1|A|C|2789
*
3J5L|1|A|G|2894
3J5L|1|A|G|2895

Current chains

Chain A
23S ribsomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2264 s