J7_3J9Y_001

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

3J9Y|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|C|8
3J9Y|1|A|G|9
3J9Y|1|A|A|10
3J9Y|1|A|C|11
3J9Y|1|A|U|12
3J9Y|1|A|A|13
3J9Y|1|A|A|14
3J9Y|1|A|G|15
*
3J9Y|1|A|U|525
3J9Y|1|A|A|526
3J9Y|1|A|C|527
3J9Y|1|A|A|528
3J9Y|1|A|A|529
3J9Y|1|A|G|530
3J9Y|1|A|C|531
*
3J9Y|1|A|G|2018
3J9Y|1|A|A|2019
3J9Y|1|A|A|2020
3J9Y|1|A|C|2021
3J9Y|1|A|U|2022
3J9Y|1|A|C|2023
*
3J9Y|1|A|G|2040
3J9Y|1|A|U|2041
3J9Y|1|A|A|2042
3J9Y|1|A|C|2043
*
3J9Y|1|A|G|2625
3J9Y|1|A|C|2626
3J9Y|1|A|G|2627
3J9Y|1|A|C|2628
3J9Y|1|A|U|2629
3J9Y|1|A|G|2630
*
3J9Y|1|A|C|2788
3J9Y|1|A|C|2789
*
3J9Y|1|A|G|2894
3J9Y|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22