J7_3JCD_001

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

3JCD|1|A|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCD|1|A|C|8
3JCD|1|A|G|9
3JCD|1|A|A|10
3JCD|1|A|C|11
3JCD|1|A|U|12
3JCD|1|A|A|13
3JCD|1|A|A|14
3JCD|1|A|G|15
*
3JCD|1|A|U|525
3JCD|1|A|A|526
3JCD|1|A|C|527
3JCD|1|A|A|528
3JCD|1|A|A|529
3JCD|1|A|G|530
3JCD|1|A|C|531
*
3JCD|1|A|G|2018
3JCD|1|A|A|2019
3JCD|1|A|A|2020
3JCD|1|A|C|2021
3JCD|1|A|U|2022
3JCD|1|A|C|2023
*
3JCD|1|A|G|2040
3JCD|1|A|U|2041
3JCD|1|A|A|2042
3JCD|1|A|C|2043
*
3JCD|1|A|G|2625
3JCD|1|A|C|2626
3JCD|1|A|G|2627
3JCD|1|A|C|2628
3JCD|1|A|U|2629
3JCD|1|A|G|2630
*
3JCD|1|A|C|2788
3JCD|1|A|C|2789
*
3JCD|1|A|G|2894
3JCD|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22