J7_4IO9_001

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4IO9|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|A|8
4IO9|1|X|U|9
4IO9|1|X|A|10
4IO9|1|X|G|11
4IO9|1|X|U|12
4IO9|1|X|A|13
4IO9|1|X|A|14
4IO9|1|X|G|15
*
4IO9|1|X|U|535
4IO9|1|X|A|536
4IO9|1|X|C|537
4IO9|1|X|A|538
4IO9|1|X|A|539
4IO9|1|X|G|540
4IO9|1|X|C|541
*
4IO9|1|X|G|2001
4IO9|1|X|A|2002
4IO9|1|X|A|2003
4IO9|1|X|U|2004
4IO9|1|X|U|2005
4IO9|1|X|G|2006
*
4IO9|1|X|C|2023
4IO9|1|X|U|2024
4IO9|1|X|A|2025
4IO9|1|X|C|2026
*
4IO9|1|X|G|2604
4IO9|1|X|C|2605
4IO9|1|X|G|2606
4IO9|1|X|C|2607
4IO9|1|X|A|2608
4IO9|1|X|G|2609
*
4IO9|1|X|C|2768
4IO9|1|X|C|2769
*
4IO9|1|X|G|2868
4IO9|1|X|U|2869

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32