J7_4IO9_002
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4IO9|1|X|G|955, 4IO9|1|X|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4IO9|1|X|C|830
4IO9|1|X|G|831
4IO9|1|X|A|832
4IO9|1|X|A|833
4IO9|1|X|A|834
4IO9|1|X|U|835
*
4IO9|1|X|A|848
4IO9|1|X|G|849
*
4IO9|1|X|U|954
4IO9|1|X|G|955
4IO9|1|X|A|956
4IO9|1|X|G|957
*
4IO9|1|X|C|982
4IO9|1|X|G|983
4IO9|1|X|A|984
4IO9|1|X|G|985
4IO9|1|X|A|986
4IO9|1|X|G|987
*
4IO9|1|X|C|998
4IO9|1|X|A|999
4IO9|1|X|G|1000
4IO9|1|X|A|1001
4IO9|1|X|C|1002
*
4IO9|1|X|G|1174
4IO9|1|X|A|1175
*
4IO9|1|X|U|1199
4IO9|1|X|G|1200
4IO9|1|X|G|1201
4IO9|1|X|U|1202
4IO9|1|X|A|1203
4IO9|1|X|G|1204
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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