3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
4LSK|1|YA|G|530, 4LSK|1|YA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4LSK|1|YA|A|8
4LSK|1|YA|U|9
4LSK|1|YA|G|10
4LSK|1|YA|G|11
4LSK|1|YA|U|12
4LSK|1|YA|A|13
4LSK|1|YA|A|14
4LSK|1|YA|G|15
*
4LSK|1|YA|U|525
4LSK|1|YA|A|526
4LSK|1|YA|C|527
4LSK|1|YA|A|528
4LSK|1|YA|A|529
4LSK|1|YA|G|530
4LSK|1|YA|C|531
*
4LSK|1|YA|G|2018
4LSK|1|YA|A|2019
4LSK|1|YA|A|2020
4LSK|1|YA|C|2021
4LSK|1|YA|U|2022
4LSK|1|YA|G|2023
*
4LSK|1|YA|C|2040
4LSK|1|YA|U|2041
4LSK|1|YA|A|2042
4LSK|1|YA|C|2043
*
4LSK|1|YA|G|2625
4LSK|1|YA|C|2626
4LSK|1|YA|G|2627
4LSK|1|YA|C|2628
4LSK|1|YA|A|2629
4LSK|1|YA|G|2630
*
4LSK|1|YA|C|2788
4LSK|1|YA|C|2789
*
4LSK|1|YA|G|2894
4LSK|1|YA|U|2895

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YE
50S ribosomal protein L3
Chain YN
50S ribosomal protein L13
Chain YU
50S ribosomal protein L20
Chain YW
50S ribosomal protein L22

Coloring options:

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