J7_4U24_003

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4U24|1|DA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|C|8
4U24|1|DA|G|9
4U24|1|DA|A|10
4U24|1|DA|C|11
4U24|1|DA|U|12
4U24|1|DA|A|13
4U24|1|DA|A|14
4U24|1|DA|G|15
*
4U24|1|DA|U|525
4U24|1|DA|A|526
4U24|1|DA|C|527
4U24|1|DA|A|528
4U24|1|DA|A|529
4U24|1|DA|G|530
4U24|1|DA|C|531
*
4U24|1|DA|G|2018
4U24|1|DA|A|2019
4U24|1|DA|A|2020
4U24|1|DA|C|2021
4U24|1|DA|U|2022
4U24|1|DA|C|2023
*
4U24|1|DA|G|2040
4U24|1|DA|U|2041
4U24|1|DA|A|2042
4U24|1|DA|C|2043
*
4U24|1|DA|G|2625
4U24|1|DA|C|2626
4U24|1|DA|G|2627
4U24|1|DA|C|2628
4U24|1|DA|U|2629
4U24|1|DA|G|2630
*
4U24|1|DA|C|2788
4U24|1|DA|C|2789
*
4U24|1|DA|G|2894
4U24|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22