J7_4U52_001
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 4U52|1|1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U52|1|1|C|949
4U52|1|1|G|950
4U52|1|1|A|951
4U52|1|1|A|952
4U52|1|1|G|953
4U52|1|1|U|954
*
4U52|1|1|A|967
4U52|1|1|G|968
*
4U52|1|1|U|1114
4U52|1|1|G|1115
4U52|1|1|G|1116
4U52|1|1|G|1117
*
4U52|1|1|C|1141
4U52|1|1|G|1142
4U52|1|1|A|1143
4U52|1|1|U|1144
4U52|1|1|G|1145
4U52|1|1|C|1146
*
4U52|1|1|G|1157
4U52|1|1|A|1158
4U52|1|1|A|1159
4U52|1|1|C|1160
4U52|1|1|G|1161
*
4U52|1|1|C|1338
4U52|1|1|C|1339
*
4U52|1|1|G|1365
4U52|1|1|A|1366
4U52|1|1|G|1367
4U52|1|1|U|1368
4U52|1|1|A|1369
4U52|1|1|G|1370
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain L7
- 60S ribosomal protein L7-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain N9
- 60S ribosomal protein L29
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
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