J7_4U67_001

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

AUAGUAAG*UACAAGC*GAAUUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

4U67|1|X|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U67|1|X|A|8
4U67|1|X|U|9
4U67|1|X|A|10
4U67|1|X|G|11
4U67|1|X|U|12
4U67|1|X|A|13
4U67|1|X|A|14
4U67|1|X|G|15
*
4U67|1|X|U|535
4U67|1|X|A|536
4U67|1|X|C|537
4U67|1|X|A|538
4U67|1|X|A|539
4U67|1|X|G|540
4U67|1|X|C|541
*
4U67|1|X|G|2001
4U67|1|X|A|2002
4U67|1|X|A|2003
4U67|1|X|U|2004
4U67|1|X|U|2005
4U67|1|X|G|2006
*
4U67|1|X|C|2023
4U67|1|X|U|2024
4U67|1|X|A|2025
4U67|1|X|C|2026
*
4U67|1|X|G|2604
4U67|1|X|C|2605
4U67|1|X|G|2606
4U67|1|X|C|2607
4U67|1|X|A|2608
4U67|1|X|G|2609
*
4U67|1|X|C|2768
4U67|1|X|C|2769
*
4U67|1|X|G|2868
4U67|1|X|U|2869

Current chains

Chain X

23s RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32