J7_4V4R_001

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CGAAAUG*CAGC*GUGAGG*CCGAGCGC*GAGAC*GG*CGGUAG

Length

38 nucleotides

Bulged bases

4V4R|1|BA|G|944, 4V4R|1|BA|A|945, 4V4R|1|BA|A|973, 4V4R|1|BA|G|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4R|1|BA|C|817
4V4R|1|BA|G|818
4V4R|1|BA|A|819
4V4R|1|BA|A|820
4V4R|1|BA|A|821
4V4R|1|BA|U|822
4V4R|1|BA|G|823
*
4V4R|1|BA|C|834
4V4R|1|BA|A|835
4V4R|1|BA|G|836
4V4R|1|BA|C|837
*
4V4R|1|BA|G|942
4V4R|1|BA|U|943
4V4R|1|BA|G|944
4V4R|1|BA|A|945
4V4R|1|BA|G|946
4V4R|1|BA|G|947
*
4V4R|1|BA|C|970
4V4R|1|BA|C|971
4V4R|1|BA|G|972
4V4R|1|BA|A|973
4V4R|1|BA|G|974
4V4R|1|BA|C|974|||A
4V4R|1|BA|G|975
4V4R|1|BA|C|976
*
4V4R|1|BA|G|987
4V4R|1|BA|A|988
4V4R|1|BA|G|989
4V4R|1|BA|A|990
4V4R|1|BA|C|991
*
4V4R|1|BA|G|1163
4V4R|1|BA|G|1164
*
4V4R|1|BA|C|1185
4V4R|1|BA|G|1186
4V4R|1|BA|G|1187
4V4R|1|BA|U|1188
4V4R|1|BA|A|1189
4V4R|1|BA|G|1190

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain B8

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21