J7_4V4T_001

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CGAAAUG*CAGC*GUGAGG*CCGAGCGC*GAGAC*GG*CGGUAG

Length

38 nucleotides

Bulged bases

4V4T|1|BA|G|944, 4V4T|1|BA|A|945, 4V4T|1|BA|G|972, 4V4T|1|BA|A|973, 4V4T|1|BA|G|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|C|817
4V4T|1|BA|G|818
4V4T|1|BA|A|819
4V4T|1|BA|A|820
4V4T|1|BA|A|821
4V4T|1|BA|U|822
4V4T|1|BA|G|823
*
4V4T|1|BA|C|834
4V4T|1|BA|A|835
4V4T|1|BA|G|836
4V4T|1|BA|C|837
*
4V4T|1|BA|G|942
4V4T|1|BA|U|943
4V4T|1|BA|G|944
4V4T|1|BA|A|945
4V4T|1|BA|G|946
4V4T|1|BA|G|947
*
4V4T|1|BA|C|970
4V4T|1|BA|C|971
4V4T|1|BA|G|972
4V4T|1|BA|A|973
4V4T|1|BA|G|974
4V4T|1|BA|C|974|||A
4V4T|1|BA|G|975
4V4T|1|BA|C|976
*
4V4T|1|BA|G|987
4V4T|1|BA|A|988
4V4T|1|BA|G|989
4V4T|1|BA|A|990
4V4T|1|BA|C|991
*
4V4T|1|BA|G|1163
4V4T|1|BA|G|1164
*
4V4T|1|BA|C|1185
4V4T|1|BA|G|1186
4V4T|1|BA|G|1187
4V4T|1|BA|U|1188
4V4T|1|BA|A|1189
4V4T|1|BA|G|1190

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain B8

50S ribosomal protein L35

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21