J7_4V52_003

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V52|1|DB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V52|1|DB|C|8
4V52|1|DB|G|9
4V52|1|DB|A|10
4V52|1|DB|C|11
4V52|1|DB|U|12
4V52|1|DB|A|13
4V52|1|DB|A|14
4V52|1|DB|G|15
*
4V52|1|DB|U|525
4V52|1|DB|A|526
4V52|1|DB|C|527
4V52|1|DB|A|528
4V52|1|DB|A|529
4V52|1|DB|G|530
4V52|1|DB|C|531
*
4V52|1|DB|G|2018
4V52|1|DB|A|2019
4V52|1|DB|A|2020
4V52|1|DB|C|2021
4V52|1|DB|U|2022
4V52|1|DB|C|2023
*
4V52|1|DB|G|2040
4V52|1|DB|U|2041
4V52|1|DB|A|2042
4V52|1|DB|C|2043
*
4V52|1|DB|G|2625
4V52|1|DB|C|2626
4V52|1|DB|G|2627
4V52|1|DB|C|2628
4V52|1|DB|U|2629
4V52|1|DB|G|2630
*
4V52|1|DB|C|2788
4V52|1|DB|C|2789
*
4V52|1|DB|G|2894
4V52|1|DB|G|2895

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22