J7_4V53_001

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V53|1|BB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V53|1|BB|C|8
4V53|1|BB|G|9
4V53|1|BB|A|10
4V53|1|BB|C|11
4V53|1|BB|U|12
4V53|1|BB|A|13
4V53|1|BB|A|14
4V53|1|BB|G|15
*
4V53|1|BB|U|525
4V53|1|BB|A|526
4V53|1|BB|C|527
4V53|1|BB|A|528
4V53|1|BB|A|529
4V53|1|BB|G|530
4V53|1|BB|C|531
*
4V53|1|BB|G|2018
4V53|1|BB|A|2019
4V53|1|BB|A|2020
4V53|1|BB|C|2021
4V53|1|BB|U|2022
4V53|1|BB|C|2023
*
4V53|1|BB|G|2040
4V53|1|BB|U|2041
4V53|1|BB|A|2042
4V53|1|BB|C|2043
*
4V53|1|BB|G|2625
4V53|1|BB|C|2626
4V53|1|BB|G|2627
4V53|1|BB|C|2628
4V53|1|BB|U|2629
4V53|1|BB|G|2630
*
4V53|1|BB|C|2788
4V53|1|BB|C|2789
*
4V53|1|BB|G|2894
4V53|1|BB|G|2895

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22