J7_4V53_004
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 4V53|1|DB|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V53|1|DB|C|817
4V53|1|DB|G|818
4V53|1|DB|A|819
4V53|1|DB|A|820
4V53|1|DB|A|821
4V53|1|DB|G|822
*
4V53|1|DB|C|835
4V53|1|DB|G|836
4V53|1|DB|C|837
*
4V53|1|DB|G|942
4V53|1|DB|A|943
4V53|1|DB|C|944
4V53|1|DB|A|945
4V53|1|DB|C|946
*
4V53|1|DB|G|971
4V53|1|DB|A|972
4V53|1|DB|A|973
4V53|1|DB|G|974
4V53|1|DB|A|975
4V53|1|DB|G|976
*
4V53|1|DB|C|987
4V53|1|DB|A|988
4V53|1|DB|G|989
4V53|1|DB|A|990
4V53|1|DB|C|991
*
4V53|1|DB|G|1163
4V53|1|DB|C|1164
*
4V53|1|DB|G|1185
4V53|1|DB|G|1186
4V53|1|DB|G|1187
4V53|1|DB|U|1188
4V53|1|DB|A|1189
4V53|1|DB|G|1190
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L35
- Chain DA
- 5S ribosomal RNA; 5S rRNA
- Chain DL
- 50S ribosomal protein L15
- Chain DQ
- 50S ribosomal protein L20
- Chain DR
- 50S ribosomal protein L21
- Chain DY
- 50S ribosomal protein L30
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