J7_4V54_003

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V54|1|DB|A|10, 4V54|1|DB|C|11, 4V54|1|DB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V54|1|DB|C|8
4V54|1|DB|G|9
4V54|1|DB|A|10
4V54|1|DB|C|11
4V54|1|DB|U|12
4V54|1|DB|A|13
4V54|1|DB|A|14
4V54|1|DB|G|15
*
4V54|1|DB|U|525
4V54|1|DB|A|526
4V54|1|DB|C|527
4V54|1|DB|A|528
4V54|1|DB|A|529
4V54|1|DB|G|530
4V54|1|DB|C|531
*
4V54|1|DB|G|2018
4V54|1|DB|A|2019
4V54|1|DB|A|2020
4V54|1|DB|C|2021
4V54|1|DB|U|2022
4V54|1|DB|C|2023
*
4V54|1|DB|G|2040
4V54|1|DB|U|2041
4V54|1|DB|A|2042
4V54|1|DB|C|2043
*
4V54|1|DB|G|2625
4V54|1|DB|C|2626
4V54|1|DB|G|2627
4V54|1|DB|C|2628
4V54|1|DB|U|2629
4V54|1|DB|G|2630
*
4V54|1|DB|C|2788
4V54|1|DB|C|2789
*
4V54|1|DB|G|2894
4V54|1|DB|G|2895

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22