J7_4V57_001

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

4V57|1|BB|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|BB|C|8
4V57|1|BB|G|9
4V57|1|BB|A|10
4V57|1|BB|C|11
4V57|1|BB|U|12
4V57|1|BB|A|13
4V57|1|BB|A|14
4V57|1|BB|G|15
*
4V57|1|BB|U|525
4V57|1|BB|A|526
4V57|1|BB|C|527
4V57|1|BB|A|528
4V57|1|BB|A|529
4V57|1|BB|G|530
4V57|1|BB|C|531
*
4V57|1|BB|G|2018
4V57|1|BB|A|2019
4V57|1|BB|A|2020
4V57|1|BB|C|2021
4V57|1|BB|U|2022
4V57|1|BB|C|2023
*
4V57|1|BB|G|2040
4V57|1|BB|U|2041
4V57|1|BB|A|2042
4V57|1|BB|C|2043
*
4V57|1|BB|G|2625
4V57|1|BB|C|2626
4V57|1|BB|G|2627
4V57|1|BB|C|2628
4V57|1|BB|U|2629
4V57|1|BB|G|2630
*
4V57|1|BB|C|2788
4V57|1|BB|C|2789
*
4V57|1|BB|G|2894
4V57|1|BB|G|2895

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22